Sample ID | Sample accession | rheMac2 assembly chr only | MacaMv7 assembly chr only | rheMac2 assembly chr + unplaced | MacaMv7 assembly chr + unplaced |
---|---|---|---|---|---|
17573 | SRX115899 | 94.28 % | 97.03 % | 96.74 % | 97.57 % |
ON12033 | SRX144808 | 93.19 % | 96.29 % | 95.98 % | 96.95 % |
ON22186 | SRX145282 | 92.62 % | 96.21 % | 95.84 % | 96.95 % |
002T-NHP | SRX144674 | 92.09 % | 95.12 % | 94.87 % | 95.84 % |
rheMac2 | rheMac2 | MacaM7 | MacaM7 | |
---|---|---|---|---|
Variant | Het | Hom | Het | Hom |
Animal 17573 | ||||
START_LOST | 34 | 4 | 8 | 0 |
STOP_GAINED | 200 | 25 | 42 | 0 |
STOP_LOST | 86 | 70 | 5 | 0 |
FRAME_SHIFT | 394 | 669 | 100 | 4 |
SPLICE_SITE_ACCEPTOR | 59 | 49 | 27 | 0 |
SPLICE_SITE_DONOR | 70 | 38 | 28 | 3 |
Animal ON12033 | ||||
START_LOST | 36 | 19 | 13 | 4 |
STOP_GAINED | 278 | 84 | 99 | 9 |
STOP_LOST | 71 | 132 | 6 | 3 |
FRAME_SHIFT | 618 | 722 | 232 | 29 |
SPLICE_SITE_ACCEPTOR | 74 | 68 | 45 | 11 |
SPLICE_SITE_DONOR | 91 | 71 | 50 | 13 |
Animal ON22186 | ||||
START_LOST | 29 | 20 | 9 | 4 |
STOP_GAINED | 211 | 77 | 59 | 6 |
STOP_LOST | 68 | 116 | 10 | 0 |
FRAME_SHIFT | 484 | 778 | 188 | 24 |
SPLICE_SITE_ACCEPTOR | 69 | 64 | 33 | 14 |
SPLICE_SITE_DONOR | 73 | 60 | 34 | 13 |
Animal 002 T-NHP | ||||
START_LOST | 25 | 18 | 10 | 2 |
STOP_GAINED | 222 | 67 | 86 | 5 |
STOP_LOST | 55 | 112 | 10 | 1 |
FRAME_SHIFT | 505 | 654 | 228 | 27 |
SPLICE_SITE_ACCEPTOR | 77 | 57 | 52 | 6 |
SPLICE_SITE_DONOR | 84 | 60 | 48 | 10 |
17573 | ON12033 | ON22186 | 002 T-NHP | |
---|---|---|---|---|
Synonymous | 15,689 (64.6 %) | 30,566 (65.7 %) | 23,145 (64.9 %) | 25,066 (65.0 %) |
Non-synonymous | 8563 (35.2 %) | 15,874 (34.1 %) | 12,416 (34.8 %) | 13,399 (34.7 %) |
Nonsense | 50 (0.2 %) | 109 (0.2 %) | 100 (0.3 %) | 99 (0.3 %) |
Total | 24,302 | 46,549 | 35,661 | 38,564 |
Animal ID | BChE activity - No inhibitor | BChE activity - 20 μM ethopropazine | BChE activity - 0.1 mM iso-OMPA |
---|---|---|---|
ON22193 | 1.38 | 0 | 0 |
ON22197 | 4.65 | 0 | 0 |
ACACA | acetyl-CoA carboxylase alpha |
BChE | butyrylcholinesterase |
CLCA4 | chloride channel accessory 4 |
LOF | loss-of-function |
GATK | Genome Analysis Toolkit |
IGV | Integrated Genome Viewer |
NCBI | National Center for Biotechnology Information |
NGS | next generation sequencing |
RNASEL | ribonuclease L |